PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0004ss00650.1
Common NameLR48_Vigan06g146400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 507aa    MW: 55305.8 Da    PI: 8.8633
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0004ss00650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-052850123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C+ C+k F r  nL+ H r H
  Vang0004ss00650.1 28 FICEVCNKGFQREQNLQLHRRGH 50
                       89*******************88 PP
2zf-C2H212.10.0006104126123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  Vang0004ss00650.1 104 WKCDKCSKKYAVQSDWKAHSKTC 126
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-62750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-72750No hitNo description
PROSITE profilePS5015710.992850IPR007087Zinc finger, C2H2
SMARTSM003550.00522850IPR015880Zinc finger, C2H2-like
PfamPF121712.4E-52850IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003551306999IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-592125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-799124No hitNo description
SMARTSM00355150104124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMYVCVCADP DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS  60
NKEPKRKVYL CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCDKCS KKYAVQSDWK  120
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAHENA RHPSNLNPLG AHHLYGTNHM  180
SLGLGAQLQN QAASANSLLS LGSAQKFEHL ISPNLHHSSS FGVQSPSHSS FFMTDPNQAF  240
QDLHQSQQQG PLFSTKQLHG LMQLPDLQGT TTNNSTSASS LSASANNANL VNLSFFPNTN  300
TRGSIINDQF SNISGGNDQG TTTLYNSSSP VSNQVGSGLS SVFGNSSLQQ DSMSPHMSAT  360
ALLQKAAQMG STTTTNGHCS LLRGTEELGI RSRMESEHSN HLRGLMNSFA NGNASMFGNV  420
KGNENNLGQF HNVSEEPKKM SQNLGLCFGG SDKLTLDFLG VGGMVRNMNS GGFSQREQQH  480
SMGTMSPLDP KLESAQANQH FGASTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35100164367Zinc finger protein JACKDAW
5b3h_F4e-35100164367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0004ss00650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427447.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_017427448.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-122IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0L9UTT20.0A0A0L9UTT2_PHAAN; Uncharacterized protein
STRINGXP_007153117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.14e-99indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]