PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0002ss01450.2

Common Name

LR48_Vigan06g068800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 270aa MW: 30339.1 Da PI: 9.1959

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0002ss01450.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Vang0002ss01450.2 21 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-32	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	18	78	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	21	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-23	119	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEGGGRESYN GLVMTMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQTR KQNEEMNKEN SRCSFVNFST RSSGPNTTYR GDNEGGETPI 120 AEALRHQIEV QKRLEEQLEV QKKLQMRIEA QGKYLQAVLE KAQRTLSLDG SGGLEASRAQ 180 LTEFNSALSN FMENMNKDSK ENIIEVTGFY NKNHGSAFHY EEVGREQNRD QKPKIDGGSI 240 QFDLNIKGSN DLMSSGGAEM DVNMISYRG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	21	74	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0002ss01450.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017426744.1	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	4e-81	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0L9US08	0.0	A0A0L9US08_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T409	0.0	A0A0S3T409_PHAAN; Uncharacterized protein
STRING	XP_007158199.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-82	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]