PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678469456
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 272aa    MW: 29814.8 Da    PI: 6.9318
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678469456genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-18116170256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++k q   Lee F+++++++  ++++L+++l+Lt rqV vWFqNrRa+ k
  678469456 116 RKKLRLSKAQSALLEESFKQHSTLNPIQKQDLSRELKLTPRQVEVWFQNRRARTK 170
                778899***********************************************98 PP
2HD-ZIP_I/II1185.2e-38116204190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rlsk q++lLEesF+++++L+p +K++l+reL+l+prqv+vWFqnrRARtk+kq+E+d+++Lk+ +++l++en+rL+ke +eL+ +
    678469456 116 RKKLRLSKAQSALLEESFKQHSTLNPIQKQDLSRELKLTPRQVEVWFQNRRARTKLKQTEVDCDFLKKLCESLTDENRRLQKELQELK-A 204
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-17106173IPR009057Homeodomain-like
PROSITE profilePS5007116.876112172IPR001356Homeobox domain
SMARTSM003892.0E-15114176IPR001356Homeobox domain
PfamPF000463.7E-15116170IPR001356Homeobox domain
CDDcd000864.91E-16116173No hitNo description
Gene3DG3DSA:1.10.10.608.7E-17116170IPR009057Homeodomain-like
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PfamPF021831.4E-9172204IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-21172215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGMGLEEEGL ALELGLSSTP PEGKPKKSAA AGAALVREHE PSLALTLSGE TYDLFPPVRS  60
DERKGKSIDL YRQDSGASSF SSVKRERAIN GGDEAEETER VSSRVSDEDD DGSNARKKLR  120
LSKAQSALLE ESFKQHSTLN PIQKQDLSRE LKLTPRQVEV WFQNRRARTK LKQTEVDCDF  180
LKKLCESLTD ENRRLQKELQ ELKAIHSAQP LYMQIPAATL TMCPSCERIA SASALAVVPE  240
TPAKSSLIMA AAAAAPKPNL FNPSVSSLLI NH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678469456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.11e-109homeobox-leucine zipper protein HAT22-like
SwissprotP466048e-79HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9GQ011e-108A0A2G9GQ01_9LAMI; Transcription factor HEX
STRINGMigut.H00315.1.p1e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-69HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]