PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678468249
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 293aa    MW: 32571.6 Da    PI: 7.6786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678468249genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd llv +v+q+G g+W++++   g+ R+ k+c++rw +yl
        678468249 14 KGPWTPEEDILLVSYVQQHGAGNWRAVPTNAGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.41.1e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        678468249  67 RGNFSQQEEKTIIHLQALLGNR-WAAIAAYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.618965IPR017930Myb domain
SuperFamilySSF466891.72E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-141363IPR001005SANT/Myb domain
PfamPF002492.9E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231568IPR009057Homeodomain-like
CDDcd001677.04E-121661No hitNo description
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.6266116IPR017930Myb domain
PfamPF002496.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2469116IPR009057Homeodomain-like
CDDcd001671.45E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRPPCCEKI GVKKGPWTPE EDILLVSYVQ QHGAGNWRAV PTNAGLLRCS KSCRLRWTNY  60
LRPGIRRGNF SQQEEKTIIH LQALLGNRWA AIAAYLPQRT DNDIKNYWNT HLKKKVMKGD  120
QNPSEDGGPI KSSSSSSCAK GQWERRLQTD IQTAKRELFE ALALGKSDES DPPSLIQMMN  180
PPPTPSSSYA SNAENIARLL QNWMKKPVDA EKYSDDGVNL CSSSPDETKS FSGGDCVKCE  240
IGNSGPNQGR RNNSDQTQMP IALFDKWLME DGANQGQFGD FIDIAMAETA DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678468249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071639.11e-115myb-related protein 306
SwissprotP813921e-105MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A059PRE31e-118A0A059PRE3_SALMI; MYB-related transcription factor
STRINGMigut.I00176.1.p1e-109(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.24e-95myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]