PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467361
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 406aa    MW: 45824.1 Da    PI: 5.3413
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467361genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.6e-37141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+ye+led+++++++sws+n++sf+v+++ ef+++vLp+yFkh nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll++i+
     678467361  14 FVTKTYEMLEDKSMNSVVSWSQNNKSFIVWNPPEFSRHVLPRYFKHCNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFIRGQPQLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     678467361 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.08E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.6E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDEAPCSSNS LAPFVTKTYE MLEDKSMNSV VSWSQNNKSF IVWNPPEFSR HVLPRYFKHC  60
NFSSFIRQLN TYGFRKVDPE KWEFANEDFI RGQPQLLKNI HRRKPVHSHS LPNLASLSPL  120
TEYERNGYKD EVERLSRDRD TLVMELQMKK AEHDELNKLM GTLMGRVQNV ENRHASMLSS  180
LAQTLQRPAL DFISVPEVNH RKRRFPGHDF LSEEASTKDA ERTPQTLIAE MNISPLAIFN  240
KELLEQLESS LRFWESVVID VDASEGLLLQ NDSSSVELLE SANCASSPGI SYTQLNTDIP  300
DHIPAIDMNA EPKTSSVGEV KAPAEGDETA YSKAGVNDVF WEQFLTENPG SNGASVFHPG  360
IKDKDSKKNT RKSSDDKLVD PLLNPADDAF GSSNFGQRKL LQAVTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-201410329129Heat shock factor protein 1
5d5v_B1e-201410329129Heat shock factor protein 1
5d5v_D1e-201410329129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467361
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849282.11e-145PREDICTED: heat stress transcription factor A-4c
TrEMBLA0A2G9HV991e-147A0A2G9HV99_9LAMI; Uncharacterized protein
STRINGMigut.M00999.1.p1e-144(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-97heat shock transcription factor A4A