PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678467352
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 403aa    MW: 45455.6 Da    PI: 5.0394
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678467352genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.9e-36141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+ye+led+++++++sws+n++sf+v+++ ef+++vLp+yFkh nf+SF+RQLn+YgF+k+  e+         weF+++ F +g+ +ll++i+
     678467352  14 FVTKTYEMLEDKSMNSVVSWSRNNKSFIVWNPPEFSRHVLPRYFKHCNFSSFIRQLNTYGFRKIVPEK---------WEFANEDFIRGQPQLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     678467352 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.18E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDEAPCSSNS LAPFVTKTYE MLEDKSMNSV VSWSRNNKSF IVWNPPEFSR HVLPRYFKHC  60
NFSSFIRQLN TYGFRKIVPE KWEFANEDFI RGQPQLLKNI HRRKPVHSHS LPNLASLSPL  120
TEYERNGYKD EVERLSRDRD TLVMELQTKK AEHDELNKLM GTLMGRVQNV ENRHASMLSS  180
LAQTLQRPGL DFISVPEVNH RKRRFPGHDF LSEEASTKDA ERTPQTLIAE MDISPLAIFN  240
KELLEQLESS LRFWESVVID VDASEGLLLQ NDSSSVELLE SANCASSPGI SYTQLNTDIP  300
DHTPAIDMNA EPKTSSVGEV EAPAEGDETA YSKAGVNDVF WEQFLTENPG SNGASVSHPG  360
IKDKDSKKNT RKSSDGSDVY WSNTADVNTL SEQLGNLTPT ERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-211410329129Heat shock factor protein 1
5d5v_B4e-211410329129Heat shock factor protein 1
5d5v_D4e-211410329129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678467352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849282.11e-153PREDICTED: heat stress transcription factor A-4c
TrEMBLA0A2G9HV991e-155A0A2G9HV99_9LAMI; Uncharacterized protein
STRINGMigut.M00999.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-105heat shock transcription factor A4A