PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678467294 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | YABBY | ||||||||
Protein Properties | Length: 216aa MW: 24104.7 Da PI: 7.4703 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 171.5 | 5.7e-53 | 12 | 178 | 3 | 169 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll.svnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss.ek 100 +++ se++Cyv+C+ C+t+lav sl k v CG ll s+ + a ll+a + + ++ ++l ++ +e+ l+s v ++ + ++++++ + 678467294 12 HNHLSEKLCYVKCTLCQTVLAV--GECSLCKPVQDGCGSLRPLLqSLLFEYAWSLLPAAPNSQLHFGNSLFPPQNIQEDFLTSPVNQQLALHQQIPTdTP 109 56789***************97..5899************99984677777889***************9999999999999888888777777766146 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++ ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fg 678467294 110 IPFRGMEELPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFG 178 7999*******999******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.6E-48 | 15 | 179 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.45E-8 | 122 | 173 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 127 | 174 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSTSCFPPEQ LHNHLSEKLC YVKCTLCQTV LAVGECSLCK PVQDGCGSLR PLLQSLLFEY 60 AWSLLPAAPN SQLHFGNSLF PPQNIQEDFL TSPVNQQLAL HQQIPTDTPI PFRGMEELPK 120 PPVVNRPPEK RQRVPSAYNR FIKDEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIQFGMM 180 PDPAVKKPNA YQQEGDVPIM KDGILPPANN VGVSPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678467294 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090395.1 | 4e-81 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 4e-62 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | Q6SS00 | 6e-80 | Q6SS00_ANTMA; YABBY-like transcription factor GRAMINIFOLIA | ||||
STRING | VIT_15s0048g00550.t01 | 5e-75 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-64 | YABBY family protein |