PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466723
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 320aa    MW: 35626.1 Da    PI: 7.5542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466723genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1034e-32732331128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpk...................kvkaeekewyfFskrdkkyatg 71 
                lp+G++F+P+d+e++ ++L++kv g++      +++  +i+++d    i++++P++Lp                     v+++ +  +fF + +++y+tg
  678466723  73 LPAGVKFDPSDQEIL-QHLEAKVLGDPrrlhplIDE--FIPTIDgengICYTHPQKLPGgtlgicvcrkyvnnlsmltGVSKDGQVRHFFYRPSRAYTTG 169
                799***********9.99********9777543222..3444444445**********5589*****99999887665444455667************* PP

        NAM  72 krknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +rk+r ++      + +W++tgk+++v s  g+l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  678466723 170 TRKRRRVDtdadggETRWHKTGKTRPVSS-AGKLKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 233
                *****633345555778***********9.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3364252IPR003441NAC domain
PROSITE profilePS5100531.7573252IPR003441NAC domain
PfamPF023651.7E-1474233IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLPPLDDADP LLTSHGITAT KTAEMRWCID DHRPNFQHEE GEEDTFICCP SCGNTFQLRH  60
HQVTQVGGGL RDLPAGVKFD PSDQEILQHL EAKVLGDPRR LHPLIDEFIP TIDGENGICY  120
THPQKLPGGT LGICVCRKYV NNLSMLTGVS KDGQVRHFFY RPSRAYTTGT RKRRRVDTDA  180
DGGETRWHKT GKTRPVSSAG KLKGYKKILV LYTNYGRQKK PEKTNWVMHQ YHLGDNEQEN  240
DGELVISKVF YQTQPRHCGK SGDTTECIVN YYKDAAATAF ISCDDDDGMA PTMRDYIVHG  300
GGGGAPFIGV TSTGSKPKIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174RKRRR
2171175KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086035.11e-112NAC domain-containing protein 10
RefseqXP_011096365.11e-112NAC domain-containing protein 73
RefseqXP_020551495.11e-112NAC domain-containing protein 10
SwissprotF4HY611e-104NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A2G9GL671e-112A0A2G9GL67_9LAMI; Uncharacterized protein
STRINGXP_002509421.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-106NAC domain containing protein 10