PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G28470.1 | ||||||||
Common Name | ANAC010, F3M18.9, NAC010, SND3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35498.7 Da PI: 7.6184 | ||||||||
Description | NAC domain containing protein 10 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.7 | 6.9e-34 | 77 | 217 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + + AT1G28470.1 77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeghETR 170 799***********9.89*****999956644322..22222333336**********.566677888******************733345444788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++vls ++ ++g kk+Lv+y gr++k+ekt+Wvmh+y+l AT1G28470.1 171 WHKTGKTRPVLS-QSGETGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 217 ************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-36 | 68 | 236 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.776 | 77 | 236 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-15 | 78 | 217 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000272 | anatomy | protoxylem | ||||
PO:0005352 | anatomy | xylem | ||||
PO:0005848 | anatomy | secondary xylem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSWCDGSDDN YDLNLERVSN TDHPSVQLKD QSQSCVTSRP DSKISAETPI TTCPSCGHKL 60 HHHQDDQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLHPLID EFIPTLEGEN 120 GICYTHPEKL PGVSKDGQVR HFFHRPSKAY TTGTRKRRKV STDEEGHETR WHKTGKTRPV 180 LSQSGETGFK KILVLYTNYG RQKKPEKTNW VMHQYHLGSS EDEKDGEPVL SKVFYQTQPR 240 QCGSMEPKPK NLVNLNRFSY ENIQAGFGYE HGGKSEETTQ VIRELVVREG DGSCSFLSFT 300 CDASKGKESF MKNQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.23603 | 0.0 | root| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30690448 | 0.0 | ||||
Genevisible | 261441_at | 0.0 | ||||
Expression Atlas | AT1G28470 | - | ||||
AtGenExpress | AT1G28470 | - | ||||
ATTED-II | AT1G28470 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G28470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT1G32770 (A), AT1G71930 (A), AT2G46770 (A), AT3G61910 (A), AT5G62380 (A) |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G28470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 0.0 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_564309.1 | 0.0 | NAC domain containing protein 10 | ||||
Swissprot | F4HY61 | 0.0 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A178W8W6 | 0.0 | A0A178W8W6_ARATH; SND3 | ||||
STRING | AT1G28470.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 | Representative plant | OGRP525 | 15 | 85 |
Link Out ? help Back to Top | |
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Phytozome | AT1G28470.1 |
Entrez Gene | 839747 |
iHOP | AT1G28470 |
wikigenes | AT1G28470 |