PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466455

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 343aa MW: 38219.4 Da PI: 7.1612

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466455	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.9e-39	111	239	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101 agkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LG+dk+sktieWL+ ++k+aikel+ ++s++++++ ++ss++++s + + + s+ ++ 678466455 111 AGKKDRHSKICTAQGIRDRRMRLSLQVARKFFDLQDMLGYDKASKTIEWLFAKSKKAIKELNINNSNNNEQS---LNVSSGDTKSDSFVSDCEVISEIEE 207 89**************************************************************77777333...4444444444442222233333333 PP TCP 102 ksaasalnlakesrakarararertrekmrik 133 +s++ a +l k++ +++ rt++k++ik 678466455 208 SSNKDAVKLEPTGDLKESNEKKRRTKDKKMIK 239 33333345555556666666666777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.9E-40	112	234	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.463	113	171	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MFHPSSMGAS SSFSWRLPGE NPNHQQEEPH LLFHFPSQFY DVVNNSDNDV SMNHHQIQVQ 60 NPVISGNLLD HTDRNPKNFG VLDGTKVDAQ GGSNSSGVRR RSLGVIPRRK AGKKDRHSKI 120 CTAQGIRDRR MRLSLQVARK FFDLQDMLGY DKASKTIEWL FAKSKKAIKE LNINNSNNNE 180 QSLNVSSGDT KSDSFVSDCE VISEIEESSN KDAVKLEPTG DLKESNEKKR RTKDKKMIKD 240 TSPTELGFSS FEQDPIFPNH VRNLPYGEDY TSLEQHPADC GTIEKLLGIP SSSFSAGSYM 300 DPNVSFMGLL GWDIFTAHER GGSTSSNQVS PPGNSTPIYP SNH

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MFHPSSMGAS SSFSWRLPGE NPNHQQEEPH LLFHFPSQFY DVVNNSDNDV SMNHHQIQVQ  60
NPVISGNLLD HTDRNPKNFG VLDGTKVDAQ GGSNSSGVRR RSLGVIPRRK AGKKDRHSKI  120
CTAQGIRDRR MRLSLQVARK FFDLQDMLGY DKASKTIEWL FAKSKKAIKE LNINNSNNNE  180
QSLNVSSGDT KSDSFVSDCE VISEIEESSN KDAVKLEPTG DLKESNEKKR RTKDKKMIKD  240
TSPTELGFSS FEQDPIFPNH VRNLPYGEDY TSLEQHPADC GTIEKLLGIP SSSFSAGSYM  300
DPNVSFMGLL GWDIFTAHER GGSTSSNQVS PPGNSTPIYP SNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	KKRRTK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466455

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8DNE3	3e-63	S8DNE3_9LAMI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-31	TCP domain protein 12