PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466428
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20708.9 Da    PI: 10.1686
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466428genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.5e-141153345
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               i n++ r  tf kR+ g++KK +EL vLC+++v+ i++  +g+
  678466428 11 IPNERTRRETFKKRKRGLFKKLNELQVLCNVDVCGIVMNDNGT 53
               789999*******************************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.591152IPR002100Transcription factor, MADS-box
CDDcd002668.87E-20285No hitNo description
SuperFamilySSF554551.06E-20290IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTRSRIKYEL IPNERTRRET FKKRKRGLFK KLNELQVLCN VDVCGIVMND NGTRPEVFPS  60
LHDASRVIQR FNNLPPSTKG TNMVDQLRYL RINLNRVSTN VDKESRKVKS LENEVVLAEC  120
LKNEEGVKVE TSERLHEMLR LLERKIAMVD HRIADIEKSE AYHGKGKKPL EDPGKCNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RRETFKKRKRGLFKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G9H1K61e-64A0A2G9H1K6_9LAMI; Uncharacterized protein
STRINGMigut.C01325.1.p5e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA858166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-13AGAMOUS-like 80