PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466138
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 323aa    MW: 34796.6 Da    PI: 6.3099
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466138genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.8e-17218252135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  678466138 218 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 252
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.0E-807301IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-16212262IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.991212248IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-14214275No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13216250IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.89E-12217264No hitNo description
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
PfamPF003201.2E-14218252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEYLGSDHCE FSSGDNKNGN GGAHFTMDDL LDFSKEDEGI TDPDGFLVNS GDSSTLTPVE  60
SCNSSVSGGP EPLHCQGKIS CRSSLTDSSS QFPGNELCVP YDDLAELEWL SNFVEESFSN  120
EDLGCLIPAT ATATDTSSSI TAIPAPVQVP TPPPATFPPD VSVPGKARSK RPRAPPCDWS  180
SRVLHVAAAA KKQDTGGGGS NNVNNSSTTE AAPTGRKCLH CASEKTPQWR TGPMGPKTLC  240
NACGVRYKSG RLVPEYRPAA SPTFVSNKHS NSHRKVLELR RQKEQQRQQQ QVMGHVSIFN  300
GCDDFMIHHH NAILSGHDLR HMM
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851153.11e-128GATA transcription factor 9-like
TrEMBLA0A4D8YRS51e-128A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGMigut.I00908.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-58GATA transcription factor 9