PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678466030
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bZIP
Protein Properties Length: 193aa    MW: 20941.4 Da    PI: 9.9975
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678466030genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.6e-1684145162
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                +ke+kr +r+ +NR++A+  R+RKka++ eLe +vk Le++N +L ++l++l++e + l++ 
  678466030  84 DKESKRLKRLLRNRVSAQQARERKKAYLTELEARVKDLETKNAELDERLSTLQNENQMLRQI 145
                689******************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-1684148IPR004827Basic-leucine zipper domain
PfamPF001701.5E-1485146IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.63386149IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-1388146No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-1788148No hitNo description
CDDcd147042.54E-2089140No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MQEQASSSLA AGSLHSSSER SSSSALHIEV KEGMESDDEI RRVPEIGGEP GGASAISGGE  60
GSRRAGQAQP TAASSKKRGR SPADKESKRL KRLLRNRVSA QQARERKKAY LTELEARVKD  120
LETKNAELDE RLSTLQNENQ MLRQILKNTT AGSGGRKPEN GPCGRSTCVI PAVFLIVSCW  180
LNLFVSWVSN SDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A7e-16109148342Transcription factor HY5
2oqq_B7e-16109148342Transcription factor HY5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678466030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537585.12e-73PREDICTED: transcription factor HY5
SwissprotQ9SM503e-73HY5_SOLLC; Transcription factor HY5
TrEMBLA0A1U8E2N74e-72A0A1U8E2N7_CAPAN; Transcription factor HY5
TrEMBLA0A2G2W5664e-72A0A2G2W566_CAPBA; Uncharacterized protein
TrEMBLA0A2G2ZY994e-72A0A2G2ZY99_CAPAN; transcription factor HY5
TrEMBLA0A2G3CVK74e-72A0A2G3CVK7_CAPCH; Transcription factor HY5
STRINGSolyc08g061130.2.11e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80372430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.14e-47bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]