PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678465972
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 276aa    MW: 30946.1 Da    PI: 8.2884
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678465972genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.5e-2053113357
                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+t+t+eq+++L++l+++   r p+a++++++++kl    +++ ++V++WFqN++a+e++
  678465972  53 SRWTPTAEQIRILKDLYYNsgVRSPTADQIQRISAKLrqygKIEGKNVFYWFQNHKARERH 113
                8*****************8789*************************************95 PP
2Wus_type_Homeobox115.23.2e-3751115265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RWtPt+eQi+iL++ly+ sG+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRer+k+
          678465972  51 SSSRWTPTAEQIRILKDLYYnSGVRSPTADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERHKK 115
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.59248114IPR001356Homeobox domain
SuperFamilySSF466891.71E-1149118IPR009057Homeodomain-like
SMARTSM003894.4E-650118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-753112IPR009057Homeodomain-like
PfamPF000463.2E-1753113IPR001356Homeobox domain
CDDcd000863.13E-754115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSNPSSSFRD RRISPPLVSF CLYIFLGPES THLHMADDGG VKVSSGGARQ SSSRWTPTAE  60
QIRILKDLYY NSGVRSPTAD QIQRISAKLR QYGKIEGKNV FYWFQNHKAR ERHKKRFAAD  120
HLLRPPPPPQ LPLLSAASGP NGLPFPFLCP FYCLLHLFLC FSSGFHGGNS SFAMERRFRE  180
CSITTPTNGN HQCFAWETFS PFIDPSLKLP PGVDEEDERP ANDIEIETLP LFPMNGERTK  240
LPDSDDGRLP PHTAASLELS LSSCYRSAPP YSPSFP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678465972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100154.11e-54protein WUSCHEL
SwissprotQ6YBV12e-55WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A4D9ACH37e-54A0A4D9ACH3_SALSN; Uncharacterized protein
STRINGGLYMA01G37190.21e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-37WOX family protein