PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678465630

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 297aa MW: 33635.7 Da PI: 4.5994

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678465630	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.9	9.2e-35	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk r+kC+++Cv+ap fp ++ +kf vhk++Gasnv+k+l++lp ++r +a+++l+yeAe+r++dPvyG++g i+ lq++l+ +k l++ k+e 678465630 6 PCAACKCRRQKCTEECVFAPFFPPDDVNKFITVHKVYGASNVSKILSELPLSDRGHAAETLAYEAECRVKDPVYGCIGRISVLQKRLRMVKIMLESYKQE 105 7*****************************************************************************************9999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.405	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-34	6	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MPQSAPCAAC KCRRQKCTEE CVFAPFFPPD DVNKFITVHK VYGASNVSKI LSELPLSDRG 60 HAAETLAYEA ECRVKDPVYG CIGRISVLQK RLRMVKIMLE SYKQELSAYI ALDPEDDLLQ 120 PQQIVMNQSN ELQMFMSLNH QCQEQILVAH MAEQETILFT SRQQEQHYAT WFDGNAGYDQ 180 VQGECRGNLV YDQTAQVLDN CDTAGLQTGN IGLDHHDQGI SIQSAVELVF DSTAPSLNHH 240 IQPEETKLYP SCWNRNDTIP GFQSHLYCEP DQTVQQQLSP PTPSPSYYHQ QFDSELE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	4	109	9	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	4	109	9	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678465630

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A4D8ZEM0	4e-43	A0A4D8ZEM0_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-42	ASYMMETRIC LEAVES 2-like 1