PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464914
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 288aa    MW: 32505.7 Da    PI: 8.5396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464914genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.69.7e-53141391128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrF P+deel+v+yL++kv+g++++l ++i +vd+yk++PwdLp+k+  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk + s +g++v
  678464914  14 LPPGFRFYPSDEELMVQYLCRKVAGQDFPL-RIIGDVDLYKYDPWDLPEKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKVIAS-EGKKV 111
                79****************************.89***************8877899*************************************99.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kk Lvfy g+apkg+kt+W+mheyrl
  678464914 112 GIKKALVFYVGKAPKGRKTNWIMHEYRL 139
                **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-668163IPR003441NAC domain
PROSITE profilePS5100560.66514163IPR003441NAC domain
PfamPF023656.2E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGVRRGETLS HLNLPPGFRF YPSDEELMVQ YLCRKVAGQD FPLRIIGDVD LYKYDPWDLP  60
EKAVFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVIASEGKK VGIKKALVFY  120
VGKAPKGRKT NWIMHEYRLF DSPQKNGGSA RLDDWVLCRI YKKTCSAEKA ARASGFPKME  180
YTASPSTSSS QYDDVLDTLP EMEDRSFFPM NVESQGQRMN LAQEVCSGNF GWGDRFGPLS  240
ELGQVQFSQA PNMFTQPGVF PQEAGLPASH DPFFLGYHMN SGGSGYMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-9611694171NO APICAL MERISTEM PROTEIN
1ut4_B7e-9611694171NO APICAL MERISTEM PROTEIN
1ut7_A7e-9611694171NO APICAL MERISTEM PROTEIN
1ut7_B7e-9611694171NO APICAL MERISTEM PROTEIN
3swm_A7e-9611697174NAC domain-containing protein 19
3swm_B7e-9611697174NAC domain-containing protein 19
3swm_C7e-9611697174NAC domain-containing protein 19
3swm_D7e-9611697174NAC domain-containing protein 19
3swp_A7e-9611697174NAC domain-containing protein 19
3swp_B7e-9611697174NAC domain-containing protein 19
3swp_C7e-9611697174NAC domain-containing protein 19
3swp_D7e-9611697174NAC domain-containing protein 19
4dul_A7e-9611694171NAC domain-containing protein 19
4dul_B7e-9611694171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464914
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095243.11e-115NAC domain-containing protein 72
SwissprotQ9SQL01e-109JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLA0A022QZL01e-113A0A022QZL0_ERYGU; Uncharacterized protein
STRINGMigut.M00863.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-107NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]