PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464429
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 328aa    MW: 36780.3 Da    PI: 6.511
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464429genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.1e-35141042101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+ +++++sws++g+sf+v+++  fa+++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF++ +F +g+k+ll++i+
     678464429  14 FLLKTYEMVDDPLTSSVVSWSHTGHSFIVWNPPAFARDLLPKYFKHSNFSSFIRQLNTYGFRKVDPDQ---------WEFANLEFIRGQKHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     678464429 102 RRK 104
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.54E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5810103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEASSGSSGS PAPFLLKTYE MVDDPLTSSV VSWSHTGHSF IVWNPPAFAR DLLPKYFKHS  60
NFSSFIRQLN TYGFRKVDPD QWEFANLEFI RGQKHLLKNI HRRKPIHSHS VSQLSSSPVN  120
DSERAEFEEE IERLKQDKIS LESQLEKYKI ENQGYRNQLR LLAQALLNTD QGQPYFMEQP  180
EGPSKKRRLI GYDQVNPLQD STILSSFGVE DVYKADSLLE KFFPGIIHHI PPGAKNREMA  240
AELAVSSGDS DLNVKPCTPE CHSLVLASHS CPSIHSPEIS SIKPAENGSI PPLQPGANDV  300
FWEQFLSEAP VSSLSQVVVH SHVKTSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24310319129Heat shock factor protein 1
5d5v_B1e-24310319129Heat shock factor protein 1
5d5v_D1e-24310319129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.11e-110heat stress transcription factor A-4b
TrEMBLA0A4D9ATP72e-98A0A4D9ATP7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.H02116.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-46heat shock factor 1