PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464061
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 282aa    MW: 31811.1 Da    PI: 9.301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464061genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lvd v++ G gtW+  ++  g+ R++k+c++rw +yl
        678464061 26 RGAWTPEEDKILVDFVTKNGHGTWRNLPKLAGLLRCGKSCRLRWTNYL 73
                     89******************************99************97 PP
2Myb_DNA-binding50.25.7e-1679150148
                      TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ +++++++lG++                         +W++Ia++++ gRt++++k++w+++l
        678464061  79 RGPFTPQEEKTIIHLHQRLGNNpngahvmkseslrppdclltmcvasRWAAIASKLP-GRTDNDVKNFWNSHL 150
                      89*******************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-231776IPR009057Homeodomain-like
PROSITE profilePS5129423.2432177IPR017930Myb domain
SuperFamilySSF466892.05E-232398IPR009057Homeodomain-like
SMARTSM007173.6E-122575IPR001005SANT/Myb domain
PfamPF002493.5E-152673IPR001005SANT/Myb domain
CDDcd001677.78E-102873No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2377153IPR009057Homeodomain-like
PROSITE profilePS512949.99278154IPR017930Myb domain
SMARTSM007174.2E-1378152IPR001005SANT/Myb domain
PfamPF002495.8E-1479150IPR001005SANT/Myb domain
CDDcd001677.43E-981150No hitNo description
SuperFamilySSF466892.05E-23125146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVKKSEKRRR KKRGRVPCCD KEGVKRGAWT PEEDKILVDF VTKNGHGTWR NLPKLAGLLR  60
CGKSCRLRWT NYLRPDIKRG PFTPQEEKTI IHLHQRLGNN PNGAHVMKSE SLRPPDCLLT  120
MCVASRWAAI ASKLPGRTDN DVKNFWNSHL RKRVGDRSSS KAFHTSEGVH TGLGAPPNKH  180
LGDYFMRLWN SEVGESFRNQ REMTIECDGG FSGSQGSKQE NTVAAADYKG GGCCKEEPED  240
LAAYSDTSKS IDIEMLTLLL DFPSEESDMG FLRGSFDREF YA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-222415425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612KRRRKKR
2712RRRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076175.16e-89transcription factor MYB3-like
TrEMBLA0A059PRR82e-83A0A059PRR8_SALMI; MYB-related transcription factor
STRINGMigut.F01122.1.p3e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-68myb domain protein 17