PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678463653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 138aa MW: 15651.5 Da PI: 8.0112 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 49.7 | 6.7e-16 | 80 | 132 | 3 | 55 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lL++cA+ v+++d++ a+ lL+r+++++s++gd+++Rla+ ft AL+arla+ 678463653 80 GLLIQCAQIVANHDFRTANDLLTRIRQHSSSHGDSTERLAHSFTTALEARLAG 132 68*************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.16 | 52 | 138 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-13 | 80 | 132 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MINPSREESD SVRLDRFSEN MMNCDFESEP IEMYYNVPLC GKTDGDSCEN SKKSWRGHNR 60 GRRKGSKKHG ITREFVDLSG LLIQCAQIVA NHDFRTANDL LTRIRQHSSS HGDSTERLAH 120 SFTTALEARL AGTGILRH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678463653 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089500.1 | 7e-39 | scarecrow-like protein 30 | ||||
TrEMBL | A0A2G9I6F4 | 2e-30 | A0A2G9I6F4_9LAMI; Uncharacterized protein | ||||
STRING | XP_009612535.1 | 1e-26 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17136 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 3e-22 | GRAS family protein |