PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678462432
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27441.4 Da    PI: 8.9795
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678462432genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.61.8e-1786138254
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                rk+ ++tk+q   Le+ F+k+ +++  +++ LA++l+Lt rqV vWFqNrRa+
  678462432  86 RKKLRLTKSQSALLEDSFKKHTTLNPIQKQGLARELKLTPRQVEVWFQNRRAR 138
                788899**********************************************8 PP
2HD-ZIP_I/II78.79.2e-2686139154
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                  +kk+rl+k q++lLE+sF+++++L+p +K+ lareL+l+prqv+vWFqnrRAR+
    678462432  86 RKKLRLTKSQSALLEDSFKKHTTLNPIQKQGLARELKLTPRQVEVWFQNRRARF 139
                  69***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-1775139IPR009057Homeodomain-like
PROSITE profilePS5007115.85682142IPR001356Homeobox domain
SMARTSM003894.4E-1384146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.2E-1786139IPR009057Homeodomain-like
CDDcd000862.14E-1586138No hitNo description
PfamPF000467.6E-1586138IPR001356Homeobox domain
SMARTSM003402.6E-14166206IPR003106Leucine zipper, homeobox-associated
PfamPF021833.3E-9166198IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGIDDASHAG LVLGLGFSWA GTEESPGTAG MAEESSFDCN AEPSLTLSLC DLEKKADSQG  60
GASSLTSVKR DCSRVSDEDD DGSNARKKLR LTKSQSALLE DSFKKHTTLN PIQKQGLARE  120
LKLTPRQVEV WFQNRRARFV PISLFRKSIK PRNTRNRCWI CRTKLKQTEV DCEFLKRLCE  180
TLRNENRRLQ KELQALKSGS PSCTQIPAIT ICPSCERIAG VPDAPPGQST CMTPRKKQLA  240
CTANQLLV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678462432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486665.12e-64PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-55HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9H1F91e-66A0A2G9H1F9_9LAMI; Transcription factor HEX
STRINGGorai.007G228000.13e-63(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-57HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]