PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678462164 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 232aa MW: 27549.1 Da PI: 5.3299 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.8 | 2.9e-16 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq++ Le+ Fe ++ + e+++ LAk+ gL+erqV vWFqNrRa+++ 678462164 60 KKRRLRAEQVQFLEKSFEIENRLEPERKALLAKEAGLQERQVAVWFQNRRARYR 113 5668999*********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 109.9 | 1.8e-35 | 59 | 149 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl +eqv++LE+sFe e++LeperK+ la+e glq rqvavWFqnrRAR++tk lEkdy aLk+++++lk++ ++L ke+ee+r+e+ 678462164 59 EKKRRLRAEQVQFLEKSFEIENRLEPERKALLAKEAGLQERQVAVWFQNRRARYRTKVLEKDYYALKARFQTLKADYDALVKENEEMRNEI 149 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-17 | 51 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-14 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-13 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.97E-13 | 60 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-18 | 66 | 113 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.0E-5 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-5 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-12 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEGEEEQVHY TARKVSMKRE GIPFSPGHAD SLRFNLQGRS QAAQMEDDEQ ELLFPSHQEK 60 KRRLRAEQVQ FLEKSFEIEN RLEPERKALL AKEAGLQERQ VAVWFQNRRA RYRTKVLEKD 120 YYALKARFQT LKADYDALVK ENEEMRNEII LLSEKMNQKG EKLKQEESNE VKLLLEPLNG 180 DPLDFDLSQT LAQDEKNKST PKLEFEWDEY LQPNCCNLGF PVRNQGTWFW KY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678462164 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071034.1 | 1e-52 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A4D8YIS3 | 2e-55 | A0A4D8YIS3_SALSN; Homeobox-leucine zipper protein | ||||
TrEMBL | A0A4D9APJ0 | 2e-55 | A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Solyc05g006980.2.1 | 3e-44 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-37 | homeobox 1 |