PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678461921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Trihelix | ||||||||
Protein Properties | Length: 196aa MW: 23810.9 Da PI: 5.7197 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.4 | 2.7e-11 | 2 | 43 | 42 | 86 |
trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 g++r+p+qCk+kw+nl +r+k ++ e+++ ++++p++++l+ 678461921 2 GYNRNPEQCKCKWKNLVTRFKGSEAVEGDG---MRQQFPFYKELQ 43 9***************************97...56679*****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-8 | 2 | 45 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MGYNRNPEQC KCKWKNLVTR FKGSEAVEGD GMRQQFPFYK ELQEIFGARM QRMLWMEAEA 60 GSASTPKKKP ELSDEEEGEN EESEGENGGQ RKKRRTQSRN AFSENPLIRG VKEIMEEFMK 120 QQMQMEMQWI REYEAREEER RGREMEWRRR MEDLERERVL MERSFKEEEE QRRVREEARA 180 EKRDALITAL LEKLRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678461921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095020.1 | 8e-69 | trihelix transcription factor GT-3b | ||||
Refseq | XP_020553261.1 | 8e-69 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 2e-36 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A2Z7B1Q6 | 3e-72 | A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b | ||||
STRING | Migut.J00154.1.p | 6e-67 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 6e-25 | Trihelix family protein |