PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678461853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HSF | ||||||||
Protein Properties | Length: 144aa MW: 16536.9 Da PI: 4.3409 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 74.6 | 1.8e-23 | 62 | 120 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k++++++d++l+ +isw g+sfvv+d+ efa+++Lp+ Fkh+nf+SFvRQLn+Y 678461853 62 FLSKTFDLISDSSLDAIISWGPLGQSFVVWDPVEFARTILPRNFKHNNFSSFVRQLNTY 120 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.86E-21 | 58 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-20 | 58 | 139 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-25 | 59 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 6.8E-20 | 62 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 62 | 85 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-13 | 113 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MDSDDSKYPF FEPFFGYPAF EHVEHQFETK PGFEEEQGSG MEGSLVAPRP MEALFVNPIP 60 PFLSKTFDLI SDSSLDAIIS WGPLGQSFVV WDPVEFARTI LPRNFKHNNF SSFVRQLNTY 120 VGTVVSFFVY WLLCVFEIHL ILVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-18 | 38 | 120 | 4 | 87 | Heat shock factor protein 1 |
5d5v_B | 2e-18 | 38 | 120 | 4 | 87 | Heat shock factor protein 1 |
5d5v_D | 2e-18 | 38 | 120 | 4 | 87 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678461853 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092004.2 | 6e-38 | heat stress transcription factor A-3 | ||||
Refseq | XP_010096858.2 | 6e-38 | heat stress transcription factor A-3 | ||||
Refseq | XP_011094419.1 | 4e-36 | heat stress transcription factor A-2c isoform X1 | ||||
Refseq | XP_011101504.1 | 1e-35 | heat stress transcription factor A-3-like | ||||
Swissprot | Q8GYY1 | 3e-32 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A2G9GXE8 | 2e-42 | A0A2G9GXE8_9LAMI; Uncharacterized protein | ||||
STRING | XP_010092004.1 | 2e-37 | (Morus notabilis) | ||||
STRING | XP_010096858.1 | 2e-37 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA572 | 24 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 8e-27 | heat shock transcription factor A3 |