PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678461473
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 288aa    MW: 33008.1 Da    PI: 4.8936
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678461473genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-1895148356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ +q++ Le++F  ++++  +++ ++Ak+lgL+ rq+++WFqNrRa+ k
  678461473  95 KKRRLSLDQVQFLEKCFIADNKLEPDRKIQIAKELGLQPRQITIWFQNRRARSK 148
                5668999*********************************************99 PP
2HD-ZIP_I/II119.32e-3894184191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrls +qv++LE++F +++kLep+rK ++a+eLglqprq+ +WFqnrRAR kt+qlE+dyeaL+r+y++lk+e ++L +++e+L++e+
    678461473  94 EKKRRLSLDQVQFLEKCFIADNKLEPDRKIQIAKELGLQPRQITIWFQNRRARSKTRQLETDYEALHRSYERLKSEYDNLFNDHEKLKAEV 184
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-1880152IPR009057Homeodomain-like
PROSITE profilePS5007116.43990150IPR001356Homeobox domain
SMARTSM003895.6E-1893154IPR001356Homeobox domain
CDDcd000867.09E-1795151No hitNo description
PfamPF000461.6E-1595148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-17100148IPR009057Homeodomain-like
PRINTSPR000312.1E-5121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000312.1E-5130146IPR000047Helix-turn-helix motif
PfamPF021831.4E-12151188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASQIGAVNR SKNGMVSSPN QPSGSVLDSA LHFLFVAIID FWCSVRCFFL LLMLSRSRAI  60
LNFGGSRAGK PFIYPLDDDE SGATLMDEFL NQPEKKRRLS LDQVQFLEKC FIADNKLEPD  120
RKIQIAKELG LQPRQITIWF QNRRARSKTR QLETDYEALH RSYERLKSEY DNLFNDHEKL  180
KAEVLYLKTV GEPDLQAQGY EETSRRVVAD DLGEDHGSIV SSIEESLLFG GLSYTLEPDH  240
QNPTPNLNDE HVLRPDYVFS KFEVAHYLPN GFYFEFPVED PALSSWSD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678461473
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087214.13e-69homeobox-leucine zipper protein HAT5
TrEMBLA0A2G9G9Z33e-58A0A2G9G9Z3_9LAMI; Transcription factor HEX
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-36homeobox 1