PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460967
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 248aa    MW: 27015.6 Da    PI: 9.2065
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460967genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-202383357
               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               +R+t+t+eq+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  678460967 23 TRWTPTAEQIRILKDLYYNngVRSPTAEQIQRISAKLrhygKIEGKNVFYWFQNHKARERQ 83
               8*****************8678*************************************97 PP
2Wus_type_Homeobox114.35.9e-372185265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt+eQi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
          678460967 21 TSTRWTPTAEQIRILKDLYYnNGVRSPTAEQIQRISAKLRHYGKIEGKNVFYWFQNHKARERQKK 85
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-8783IPR009057Homeodomain-like
SuperFamilySSF466892.31E-121491IPR009057Homeodomain-like
PROSITE profilePS5007110.9321884IPR001356Homeobox domain
SMARTSM003892.1E-62088IPR001356Homeobox domain
PfamPF000461.0E-172383IPR001356Homeobox domain
CDDcd000866.79E-82385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAAPNDDGGS GGGGSVAGRQ TSTRWTPTAE QIRILKDLYY NNGVRSPTAE QIQRISAKLR  60
HYGKIEGKNV FYWFQNHKAR ERQKKRFTSV PPPPLPPPPH SFSDHLATAA KLNAPFSSSG  120
LHTFLFFFTS SVFLRFLPVG GFGGPLAMEM KFKEFCVTPG GVCTPQSLAW NPFSSSACFP  180
PPAREIETLP LFPIQDEMAW KLVPEGGASS VPGEGASLEL SLSSSSASWY HDEACRLPNP  240
ALKPHAHS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019447688.13e-53PREDICTED: protein WUSCHEL-like isoform X1
SwissprotQ6YBV11e-47WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2G9GV803e-55A0A2G9GV80_9LAMI; Uncharacterized protein
STRINGXP_007157924.13e-49(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-38WOX family protein