PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678460569
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 325aa    MW: 35310.1 Da    PI: 6.0379
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678460569genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.9e-17207241135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  678460569 207 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 241
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-757288IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.701201237IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-16201251IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-14203264No hitNo description
Gene3DG3DSA:3.30.50.101.5E-13205239IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.42E-13206253No hitNo description
PfamPF003201.2E-14207241IPR000679Zinc finger, GATA-type
PROSITE patternPS003440207232IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEYFVSDYSE FSSGDNKNNN AGTHFTMDDL LDFSKEEETI TDADAFLVNS GDFSTLNPVE  60
SCNSSVSGGP EPPHCDGKIA CQSSVTDSSS QFPGNDLCVP YEDLAELEWL SNFVEESFSN  120
EDLGCLIPAT ASDTSSSITG IPVPVQASTP MPATFPSEVS VPGKARSKRP RATPCDWSSR  180
VLHVAAAKKH DSGGNGAPET PHTARKCLHC ASEKTPQWRT GPMGPKTLCN ACGVRYKSGR  240
LVPEYRPAAS PTFVSNKHSN SHRKVLELRR QKEQQRQQAM GRVSIFNGCD DFMIHHHSQR  300
PGFKAHDVGH FDEPAPYPIG GAALF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678460569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851153.11e-118GATA transcription factor 9-like
TrEMBLA0A4D8YRS51e-125A0A4D8YRS5_SALSN; Uncharacterized protein
STRINGXP_009802675.11e-106(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-62GATA transcription factor 9