PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678460325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | WOX | ||||||||
Protein Properties | Length: 261aa MW: 29466.4 Da PI: 9.1235 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.2e-19 | 71 | 130 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eql+ Lee++++ r+p+ ee++++ +kl +++ ++V++WFqN++a+ek+ 678460325 71 GRWSPTREQLQFLEEMYRRgIRTPTSEEIQQIVSKLrrfgRIEGKNVFYWFQNHKAREKQ 130 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 108.2 | 4.9e-35 | 70 | 132 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW+Pt eQ++ Lee+y++G+rtP++eeiq+i ++L+++G+ie+kNVfyWFQN+kaRe+qk+ 678460325 70 SGRWSPTREQLQFLEEMYRRGIRTPTSEEIQQIVSKLRRFGRIEGKNVFYWFQNHKAREKQKK 132 67***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.175 | 66 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-4 | 68 | 135 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-12 | 71 | 135 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.8E-17 | 72 | 130 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 72 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.72E-5 | 72 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MRATLMEELR RGYIQKPSPI AASILQAGRF QGKADSCMGH HPWDQCLAGG LMDYGVKWEK 60 SIITEKMVMS GRWSPTREQL QFLEEMYRRG IRTPTSEEIQ QIVSKLRRFG RIEGKNVFYW 120 FQNHKAREKQ KKRRLLEPLA VCKFEISEQT KESGMLSRQL TEAQQGMQTQ TQTQTAAAEA 180 RRPFALSLED FSADKVTDQI EGNAYEHRLA ARASSKDTQT LELFPVKGNG GGGGGGDEED 240 GAVRGTASEN QFIEFLPLRA S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678460325 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 8e-30 | WUSCHEL related homeobox 1 |