PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678459578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27775.2 Da PI: 6.3223 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.9e-18 | 143 | 196 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Lee++e + + ++++ LA++lgL rqV +WFqNrRa+ k 678459578 143 KKRRLKPEQVRALEEVYEVETMLGPHRKQLLADELGLHPRQVAIWFQNRRARCK 196 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.7 | 4.1e-35 | 142 | 232 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LEe +e e+ L p+rK+ la eLgl+prqva+WFqnrRAR k+ lEk+y++L+++y++l++++ ++ +e+++Lr+++ 678459578 142 EKKRRLKPEQVRALEEVYEVETMLGPHRKQLLADELGLHPRQVAIWFQNRRARCKSSLLEKEYDTLRAQYEKLNSDHVAIFAENQKLRNQV 232 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.532 | 138 | 198 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-17 | 141 | 202 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 143 | 196 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.03E-15 | 143 | 198 | No hit | No description |
Pfam | PF00046 | 4.0E-15 | 143 | 196 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-16 | 143 | 208 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.4E-5 | 169 | 178 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 173 | 196 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.4E-5 | 178 | 194 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-10 | 200 | 232 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MQHEIGGFER FFKYGWKGRR RYPGGIAGHT WQSGDEEGKM DSHIPEEGIH EELMHLAAST 60 KVTFPFPSIY LLAAGRRVAA LLLESKKAME DLSPISENEF SPREVFGGES FSIQSFPLGS 120 TTGFDADRLT GNVEGQSDEL EEKKRRLKPE QVRALEEVYE VETMLGPHRK QLLADELGLH 180 PRQVAIWFQN RRARCKSSLL EKEYDTLRAQ YEKLNSDHVA IFAENQKLRN QVPFPSTDNP 240 NRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 147 | KKRRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678459578 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-24 | homeobox 1 |