PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459442
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 205aa    MW: 22692.3 Da    PI: 6.8632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459442genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00036890123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ Cg+ F++   L  H  +H
  678459442 68 YTCKTCGRAFPSFQALGGHRTSH 90
               9**********999998888777 PP
2zf-C2H211.70.00077132154123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+  Fs+   L  H+r+H
  678459442 132 HECSFCDAEFSSGQALGGHMRKH 154
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-66594No hitNo description
PfamPF139122.0E-106792IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4486895IPR007087Zinc finger, C2H2
SMARTSM003550.0816890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-4130156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.81E-6130158No hitNo description
PROSITE profilePS5015710.055132159IPR007087Zinc finger, C2H2
PfamPF139123.3E-11132156IPR007087Zinc finger, C2H2
SMARTSM003550.015132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDQIAILPRD DGDDDDGDHS STIIANGKRC SPVSALEETE IENTTSTEVD TAQSLILLSQ  60
GPKCEDTYTC KTCGRAFPSF QALGGHRTSH NKSKNDRRMF RAVDEENYSP GPSILSLQLS  120
NFSSRPKFSR IHECSFCDAE FSSGQALGGH MRKHRGNNII IRPDPRAIDH QQQPVLEANK  180
RKIVLSLDLN LPAVGDESKK TRKLP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459442
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834577.18e-37PREDICTED: zinc finger protein ZAT5
TrEMBLS8E5A73e-32S8E5A7_9LAMI; Uncharacterized protein
STRINGMigut.F01919.1.p3e-36(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-29C2H2 family protein