PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678458394
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 298aa    MW: 32531.1 Da    PI: 6.3608
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678458394genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18226259134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  678458394 226 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 259
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-737298IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-14220274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.189220256IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-14223283No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14223257IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.30E-13225274No hitNo description
PROSITE patternPS003440226251IPR000679Zinc finger, GATA-type
PfamPF003202.4E-16226259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASSQMLCDD DVWRFNAAAA PEDFPVEDLL NLDFSDKEFQ DCGGAFEEDE EGFSKLGNKN  60
SSSAFSGGAD DFDSLSTGNL AVEVEGLESL EWLSQFVDDS TAEPPSLWPI GSSTAKATTC  120
GGALTNAPSQ DNRATFYPTP VPRKRRNKRQ RSSGLRWSSV SPPLSSVDST SAASSSSHGS  180
SSLPTLVFTY IPHDPDWFSS IEKPPPAKKP KRKPENENGA VPGRRCTHCQ VQKTPQWRTG  240
PLGPKTLCNA CGVRFKSGRL FPEYRPACSP TFSQAVHSNS HRKVLEMRRV KEMTAAEF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678458394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-104GATA transcription factor 5-like
RefseqXP_020551667.11e-104GATA transcription factor 5-like
SwissprotQ9FH571e-48GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9GRK71e-102A0A2G9GRK7_9LAMI; GATA transcription factor
STRINGMigut.N01274.1.p1e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-43GATA transcription factor 9