PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678457803
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 510aa    MW: 56470.8 Da    PI: 7.3727
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678457803genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.3e-33213271160
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkversa d+ ++ei+Y+g+Hnh+k
  678457803 213 LDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSA-DGPITEIVYKGTHNHPK 271
                59****************************************.***************85 PP
2WRKY106.51.3e-33385443159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+vers++d ++v++tYeg+Hnh+
  678457803 385 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTNGCPVRKHVERSSQDRRAVITTYEGKHNHD 443
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28208272IPR003657WRKY domain
PROSITE profilePS5081124.432208272IPR003657WRKY domain
SuperFamilySSF1182907.72E-26212272IPR003657WRKY domain
SMARTSM007749.6E-38213271IPR003657WRKY domain
PfamPF031064.0E-26214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37370445IPR003657WRKY domain
SuperFamilySSF1182903.27E-29377445IPR003657WRKY domain
PROSITE profilePS5081137.883380445IPR003657WRKY domain
SMARTSM007741.7E-38385444IPR003657WRKY domain
PfamPF031064.3E-26386443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MAASSGLDFS ITSHPKSSEA TRPMAGLRPG TGVPKFKSLP PPSLPISPAP SSSWFPIPPG  60
LSPAELLDSP VLLSGSNVLP SPTTGSFPVG SFDWRSSSDR LKQEIRQEQQ QSDEQNEDYT  120
NSFFEFSFPA QKKQQHQQEL RTSYGSSMPW DYHQIQASNN NNNKAEEQSS EQIHDFNSSS  180
DQGFSPEIAT IQVKNSGFNG EYDNNNNASN RKLDDGYNWR KYGQKQVKGS ENPRSYYKCT  240
YPNCPTKKKV ERSADGPITE IVYKGTHNHP KPQSTRRSSL SSSSQSHFAD ISETQTSASV  300
SIPKMDSLSS VITFDNTSTI LPDDDFEQSR SGGDELNNEE PNPKRWKSEV ETEGNSSVGG  360
GGSSSSAAVR EPRVVVQTTS DIDILDDGFR WRKYGQKVVK GNPNPRSYYK CTTNGCPVRK  420
HVERSSQDRR AVITTYEGKH NHDVPAARGS HSVTRPLPYN PNNANLGQLG KGTSASMFDH  480
SKVQSPYTME MIRSRPKSEP RDDFMDSLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36213446878Probable WRKY transcription factor 4
2lex_A2e-36213446878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678457803
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304523.11e-153WRKY transcription factor 49
RefseqXP_028200012.11e-153WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-114WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0M4PNU91e-155A0A0M4PNU9_9MAGN; Transcription factor WRKY33
STRINGGLYMA14G38010.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-96WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]