PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678456026

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 321aa MW: 36268.5 Da PI: 6.2514

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678456026	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.1e-56	47	173	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++k+ ++k++ +vi +vd+++vePwdLp k+k +ekewyfF+ +d+ky+tg+r+nrat++gyWkatgkdke+++ +++lv 678456026 47 LPPGFRFHPTDEELITHYLRPKTVDSKFSS-RVIGDVDLNRVEPWDLPWKAKMGEKEWYFFCIKDRKYPTGSRTNRATQAGYWKATGKDKEIFR-GKALV 144 79***********************999.99***********888999************************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrap+gekt+Wvmheyrle 678456026 145 GMKKTLVFYKGRAPRGEKTNWVMHEYRLE 173 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-64	44	196	IPR003441	NAC domain
PROSITE profile	PS51005	59.477	47	196	IPR003441	NAC domain
Pfam	PF02365	2.2E-29	48	172	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MMQDGAVESD CDRWRNHLMF DIIEVPLSCV GGSEMAGEGD GDRELVLPPG FRFHPTDEEL 60 ITHYLRPKTV DSKFSSRVIG DVDLNRVEPW DLPWKAKMGE KEWYFFCIKD RKYPTGSRTN 120 RATQAGYWKA TGKDKEIFRG KALVGMKKTL VFYKGRAPRG EKTNWVMHEY RLESKDSLHT 180 LSANKGEWVI NRVFKKSSNG KKVHISGLYE SPSSCSSAQP PLTELPSGSA AAVAEVTSGT 240 SNSQEERETT GELSPFEGNS SYRDSVFPRD QSFLNLLVEN YGAYARQHGG GYEFFPESDL 300 SATFAYAFLP QEHPYDHPLD Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	32	202	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	32	202	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	32	202	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	32	202	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	32	202	1	171	NAC domain-containing protein 19
4dul_B	1e-54	32	202	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678456026

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009592902.1	1e-103	PREDICTED: NAC domain-containing protein 92-like
Refseq	XP_016490965.1	1e-103	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FLJ2	4e-90	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S4BQ12	1e-102	A0A1S4BQ12_TOBAC; NAC domain-containing protein 92-like
STRING	XP_009592902.1	1e-103	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-92	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]