PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455836
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 334aa    MW: 36133.3 Da    PI: 7.7531
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455836genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17255288134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  678455836 255 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 288
                99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-7030333IPR016679Transcription factor, GATA, plant
SuperFamilySSF577165.7E-15248311No hitNo description
SMARTSM004012.6E-16249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.24253285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-15253286IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.11E-14254303No hitNo description
PfamPF003202.3E-15255288IPR000679Zinc finger, GATA-type
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MFIGFGETQF LVGEICAGVS VPRYSVLGKM VPSLADEIDS ASNFFDQIDD LIKFPPDIEY  60
LVGAGDSNDI LPTMWNVSLP DADDAFSCTH ADKLLAELSV PHEDVVQLEW LSAFVEDSFS  120
SGGMTIGMED NLCSKKDLSV QQFQTSSPVS VLGSTTSSSS KCVGVITLSP PQSPSRQRAR  180
SKRPRPATFT PRAGIHLIPP SSPPRPFTEN FNAAPVKSNI IEPTAVEPHS KKVKITTPKV  240
TVDAASPPPQ MIRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT  300
FIPSLHSNSH KKVIEMRTKG VEATSTTTAS AKPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084325.11e-103GATA transcription factor 8 isoform X1
TrEMBLA0A2G9GV451e-103A0A2G9GV45_9LAMI; GATA transcription factor
STRINGXP_009598426.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-41GATA family protein