PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678455611
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 247aa    MW: 28051.9 Da    PI: 8.9893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678455611genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.89.2e-49311531128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelv +yL++kv + ++++ ++i+e+d ++++PwdLp     +e+e yfF++++ ky++g+r+nrat+ gyWkatg dk++++ ++++v
  678455611  31 LPPGFRFHPTDEELVLQYLRRKVFSFPVPA-SIIPEFDANRSDPWDLPG---DTEQERYFFCRKEIKYPNGSRSNRATAGGYWKATGLDKQIVV-RNHVV 125
                79***************************9.89***************3...457899************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kktLvfy g+ pkg ktdWv+heyrl
  678455611 126 GMKKTLVFYLGKPPKGCKTDWVLHEYRL 153
                **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5724179IPR003441NAC domain
PROSITE profilePS5100553.75131179IPR003441NAC domain
PfamPF023654.0E-2632153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASCSTPRST RPSSVSATQM EQPQNTIISR LPPGFRFHPT DEELVLQYLR RKVFSFPVPA  60
SIIPEFDANR SDPWDLPGDT EQERYFFCRK EIKYPNGSRS NRATAGGYWK ATGLDKQIVV  120
RNHVVGMKKT LVFYLGKPPK GCKTDWVLHE YRLLNAACQG TLAPLPVEET WVLCRMLLKK  180
RRSTKGNVTE PRRKEQGFVF YDFMAKEKAD SSSGSSGVTQ ILIRKQEQED EEEEAESSSC  240
GNSFTVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-483118517171NO APICAL MERISTEM PROTEIN
1ut4_B2e-483118517171NO APICAL MERISTEM PROTEIN
1ut7_A2e-483118517171NO APICAL MERISTEM PROTEIN
1ut7_B2e-483118517171NO APICAL MERISTEM PROTEIN
3swm_A3e-483118520174NAC domain-containing protein 19
3swm_B3e-483118520174NAC domain-containing protein 19
3swm_C3e-483118520174NAC domain-containing protein 19
3swm_D3e-483118520174NAC domain-containing protein 19
3swp_A3e-483118520174NAC domain-containing protein 19
3swp_B3e-483118520174NAC domain-containing protein 19
3swp_C3e-483118520174NAC domain-containing protein 19
3swp_D3e-483118520174NAC domain-containing protein 19
4dul_A2e-483118517171NAC domain-containing protein 19
4dul_B2e-483118517171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678455611
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.14e-92NAC domain-containing protein 83
SwissprotQ9FY933e-71NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G9H1C14e-91A0A2G9H1C1_9LAMI; Uncharacterized protein
STRINGGLYMA18G53954.12e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-73NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]