PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678452961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | Dof | ||||||||
Protein Properties | Length: 161aa MW: 18298.4 Da PI: 9.4207 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 2.9e-39 | 3 | 61 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg r+nk+ 678452961 3 QQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGYRRNKRG 61 7899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 3 | 60 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.5E-34 | 4 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.283 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 8 | 44 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MDQQALKCPR CDSTNTKFCY YNNYSLSQPR YFCKSCRRYW TKGGTLRNVP VGGGYRRNKR 60 GSNTPAKRTQ DHQLTTAPAI PNHMILSLPT MQYDTSNDLA LAVSRFFQKN TDQGFRGNPS 120 LSDLAIWGNP NLAAFDGLES HHHSNWFYSE IPGNHEVGTL F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678452961 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947524 | 5e-31 | EU947524.1 Zea mays clone 346044 mRNA sequence. | |||
GenBank | KJ726977 | 5e-31 | KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089362.1 | 2e-46 | dof zinc finger protein DOF2.1 | ||||
Swissprot | Q8LE43 | 1e-35 | DOF21_ARATH; Dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A1Q3BTQ1 | 3e-43 | A0A1Q3BTQ1_CEPFO; Zf-Dof domain-containing protein | ||||
STRING | VIT_06s0004g03420.t01 | 6e-44 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 6e-38 | Dof family protein |