PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678452938
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 219aa    MW: 25325 Da    PI: 9.1386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678452938genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1622.3e-50131351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeelv +yLk+kv + +l++ ++i+e+d+++++PwdLp     +e+e yfFsk++ ky++g+r+nrat+ gyWkatg dk++++ ++++v
  678452938  13 LPPGFRFHPTDEELVLQYLKRKVFSFPLPA-SIIPEFDVNRCDPWDLP---GDKEQERYFFSKKEVKYPNGNRSNRATACGYWKATGLDKQIVV-RNRVV 107
                79****************************.89***************...4467899************************************.8999* PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kktLvfy  + pkg+kt+Wvmheyrl
  678452938 108 GMKKTLVFYLRKPPKGSKTEWVMHEYRL 135
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-589156IPR003441NAC domain
PROSITE profilePS5100554.66913156IPR003441NAC domain
PfamPF023651.2E-2714135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKPPAGLPT RRLPPGFRFH PTDEELVLQY LKRKVFSFPL PASIIPEFDV NRCDPWDLPG  60
DKEQERYFFS KKEVKYPNGN RSNRATACGY WKATGLDKQI VVRNRVVGMK KTLVFYLRKP  120
PKGSKTEWVM HEYRLQNAAH ETPAETNWVV CRMLMKKRGS MKGELGNQKE GIVFYDFLAK  180
EKADSSCGSS GVTQLLIRKQ DEEEEEEDES SSCNSFFMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-481316217171NO APICAL MERISTEM PROTEIN
1ut4_B4e-481316217171NO APICAL MERISTEM PROTEIN
1ut7_A4e-481316217171NO APICAL MERISTEM PROTEIN
1ut7_B4e-481316217171NO APICAL MERISTEM PROTEIN
3swm_A5e-481316220174NAC domain-containing protein 19
3swm_B5e-481316220174NAC domain-containing protein 19
3swm_C5e-481316220174NAC domain-containing protein 19
3swm_D5e-481316220174NAC domain-containing protein 19
3swp_A5e-481316220174NAC domain-containing protein 19
3swp_B5e-481316220174NAC domain-containing protein 19
3swp_C5e-481316220174NAC domain-containing protein 19
3swp_D5e-481316220174NAC domain-containing protein 19
4dul_A4e-481316217171NAC domain-containing protein 19
4dul_B4e-481316217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678452938
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.12e-94NAC domain-containing protein 83
SwissprotQ9FY934e-76NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2P6892e-90A0A0B2P689_GLYSO; NAC domain-containing protein 29
TrEMBLB2ZGQ72e-90B2ZGQ7_SOYBN; NAC domain protein
STRINGGLYMA18G53954.14e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-76NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]