PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678452053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 21120.7 Da PI: 8.7395 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H +H 678452053 84 YRCTVCDKAFSSYQALGGHKASH 106 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F++ L H r+H 678452053 134 HQCSICQKCFPTGQALGGHKRKH 156 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.0E-9 | 83 | 156 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-12 | 84 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0092 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 134 | 156 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-9 | 134 | 158 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MALETVNSST APACGVDEVD TWTKSKRSKR QRRAYGTTPE EEYLAFCLMM LARGGGVGGQ 60 SPPAGGKDVK KSDGESFPRI GNCYRCTVCD KAFSSYQALG GHKASHRVKI QPTYDAAPGL 120 SASNFSVSAA DKLHQCSICQ KCFPTGQALG GHKRKHYDGV LGGAAAKSRS TSSATRNFDL 180 NLPARAEPQD EEVESAPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678452053 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022888193.1 | 3e-46 | zinc finger protein ZAT10-like | ||||
Swissprot | Q42430 | 4e-35 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A4D9BGD6 | 1e-48 | A0A4D9BGD6_SALSN; Uncharacterized protein | ||||
STRING | XP_008792675.1 | 1e-44 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 7e-34 | C2H2 family protein |