PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678451443
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 817aa    MW: 91049.1 Da    PI: 6.0126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678451443genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2095150156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  678451443  95 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 150
                688899***********************************************998 PP
2START132.16.4e-422955422206
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                la + ++elvk+ + +ep+W +ss  ++g  vl  +e +++           +++ea ++++vv+m++ +lv  +ld + +W e ++    +a+tl+v+ 
  678451443 295 LAVSSMNELVKMCTTGEPLWARSS--DTGNLVLNVEEYNRAfswnfkqnasdFRVEATKETAVVIMNSITLVDVFLDAN-KWMELFPsivsRAKTLQVVH 391
                78899*******************..444444444444444445556677899**************************.******************** PP

                TT..............................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEE CS
      START  87 sg..............................galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgil 153
                s                               +   +m+aelq+lsplvp R+  f+Ry++   ++g+w+ivd  +d  q++   s ++ R  ++pSg++
  678451443 392 SEvsehangslhlvlftffihesnifsvlclfSGNPQMYAELQVLSPLVPtREAHFLRYCQHnAEEGTWAIVDFPIDGFQNNYPpSFPYYR--RRPSGCI 489
                *************************9666666555689************************9**************77776654888888..******* PP

                EEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 154 iepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                i++++ng+s+vtwvehv++++  +h +l  +v+sg+a+ga++w+a lqrqce+
  678451443 490 IQDMPNGYSRVTWVEHVEVEDTPIHHVLAGFVSSGAAFGARRWLAGLQRQCER 542
                ***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2179150IPR009057Homeodomain-like
SuperFamilySSF466893.55E-1986153IPR009057Homeodomain-like
PROSITE profilePS5007116.87692152IPR001356Homeobox domain
SMARTSM003892.1E-1893156IPR001356Homeobox domain
PfamPF000461.1E-1795150IPR001356Homeobox domain
CDDcd000861.09E-1795153No hitNo description
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PROSITE profilePS5084840.825285545IPR002913START domain
SuperFamilySSF559611.37E-30286395No hitNo description
CDDcd088751.01E-112289541No hitNo description
SMARTSM002345.5E-19294542IPR002913START domain
PfamPF018526.2E-34295542IPR002913START domain
SuperFamilySSF559611.37E-30427544No hitNo description
SuperFamilySSF559617.0E-15573794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MYGDCQVLPT MGTNAIPLSS ESHQLYPSSL QSTNFGFMAN INPMSIFSPI IPKEENGVSK  60
SREDVLESGS GSEHIEGVSG NEQEADEQQQ PPTKKKRYHR HTARQIQEME ALFKECPHPD  120
DKQRLKLSQD LGLKPRQVKF WFQNRRTQMK AQQDRQDNVV LRAENESLKN ENYRLQAALR  180
NVVCPSCGGA AILGEVGFDE QQLRIENARL KDEYERVCCL ISQCSGRSLP ALGPVPIMPP  240
SLDLDMTPFP RKFEQDTISS CPSDHMMPLP FMPENSHFPT NPLILDEEKS LALELAVSSM  300
NELVKMCTTG EPLWARSSDT GNLVLNVEEY NRAFSWNFKQ NASDFRVEAT KETAVVIMNS  360
ITLVDVFLDA NKWMELFPSI VSRAKTLQVV HSEVSEHANG SLHLVLFTFF IHESNIFSVL  420
CLFSGNPQMY AELQVLSPLV PTREAHFLRY CQHNAEEGTW AIVDFPIDGF QNNYPPSFPY  480
YRRRPSGCII QDMPNGYSRV TWVEHVEVED TPIHHVLAGF VSSGAAFGAR RWLAGLQRQC  540
ERLASLMARN LSDLGEARKS LMNLSKRMIR TFCLNMSTSY GQSWTALSDS ADDSVRITTR  600
KVTEPGQPNG LILSAVSSSW LPYRQHQVFD FLRDEKRRAQ LEVLSNGNSL HEVAHIANGS  660
HPGNCISLFR INVASNSSQS VELVIQESCS DNSGSMVVYA TIDVEAIQMA MNGEDPSNIP  720
LLPLGFILHP MNQTSKESTK GSKKNHLPES EGLSGCLLTV GLQVLASTIP AAKLNLSSVT  780
AVDHHICNII QQINTLLSSS NGNFSSRALE TEAPQAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678451443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070329.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
SwissprotQ336P20.0ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2G9HN190.0A0A2G9HN19_9LAMI; Transcription factor, contains HOX domain
STRINGMigut.E00753.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]