PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678450000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21849.6 Da PI: 6.293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7e-17 | 37 | 85 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+GVr + +grWv+eIr+p++ + r++lg+f ta++Aa+a++ a+ + + 678450000 37 VYRGVRMRA-WGRWVSEIREPKK---KSRIWLGTFATADMAARAHDVAAMAVK 85 7*****998.**********854...6*********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.589 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 37 | 94 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-11 | 37 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-34 | 37 | 100 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 37 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.79E-30 | 38 | 95 | No hit | No description |
PRINTS | PR00367 | 5.3E-10 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MERQRSTAGA PDKRKRKCGA TEKQLQQQQQ QEWKQKVYRG VRMRAWGRWV SEIREPKKKS 60 RIWLGTFATA DMAARAHDVA AMAVKGSSAV LNFPEIADLL PRPATSSTRD IQAAATKAAM 120 LDQPQRSSPS FVDSELSTAP EELEEIVELP KLSGGEEFTA VETGVWEYDD YDQPPIFLSL 180 HSEDFESLLW KHSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 34 | 94 | 2 | 63 | ATERF1 |
3gcc_A | 1e-16 | 34 | 94 | 2 | 63 | ATERF1 |
5wx9_A | 3e-16 | 38 | 99 | 15 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678450000 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093630.1 | 3e-52 | ethylene-responsive transcription factor TINY-like | ||||
TrEMBL | A0A2G9H814 | 1e-52 | A0A2G9H814_9LAMI; Uncharacterized protein | ||||
STRING | Migut.J01109.1.p | 2e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 5e-34 | ERF family protein |