PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678448230

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HSF

Protein Properties

Length: 321aa MW: 36203.5 Da PI: 5.4633

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678448230	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	7e-36	27	117	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d++++e+isw+++g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ l++i+ 678448230 27 FLTKTFQLVDDHSIDEVISWNDDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKKRLCDIQ 114 9***************************************************************99.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k 678448230 115 RRK 117 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.1E-37	20	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-56	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.48E-34	24	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.0E-32	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MAPLTVDRGG GGEPPAADGA RSLPTPFLTK TFQLVDDHSI DEVISWNDDG STFIVWNPTE 60 FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSND CFRRGEKKRL CDIQRRKIAA 120 TPTLPLTEAM FHPMTAAPPR TMSPCDSGEE LVHFSNSSPP PPVREFGGTR SMDLMGENER 180 LRKENVQLNK ELNQMKSLCN NIYVLMSSYG SDQKSNGDSN LLYSSENAVK PLDLLPMTSF 240 CSEMETAVEN GGEDDNPPTP PEQIYATLFG VHIGAKRGRE IHRSPPDNEA DDNLKMYCQE 300 PASNQMDSRW LNRCNSRNRT A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	6	116	7	129	Heat shock factor protein 1
5d5v_B	2e-25	6	116	7	129	Heat shock factor protein 1
5d5v_D	2e-25	6	116	7	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678448230

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076201.1	1e-141	heat stress transcription factor B-2a
Refseq	XP_011076202.1	1e-141	heat stress transcription factor B-2a
Swissprot	Q6Z9C8	2e-77	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A2Z4K5C0	1e-120	A0A2Z4K5C0_TECGR; HSF2 protein
STRING	Migut.F00357.1.p	1e-120	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2182	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	7e-78	heat shock transcription factor B2A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]