PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678448114
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 321aa    MW: 36324 Da    PI: 6.6456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678448114genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.94.5e-54711961128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeel+v+yL++++ ++++++ +vi+evdiyk++PwdLp k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++s +++ v
  678448114  71 LPPGFRFHPTDEELIVHYLRNQAMSRPCPA-SVIPEVDIYKFDPWDLPDKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKPIYS-GSKYV 168
                79****************************.99***************99999*****************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kk Lvfy+gr pkg+k+dW+mheyrl
  678448114 169 GIKKALVFYQGRPPKGTKSDWIMHEYRL 196
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6765223IPR003441NAC domain
PROSITE profilePS5100561.96171223IPR003441NAC domain
PfamPF023651.8E-2672196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGTSFIHPDP NWGQMETCSR RQDMIDGTPI IPGHEAAYEE ALPADSLIHY VVLFYGRSST  60
SMDGKMTCSG LPPGFRFHPT DEELIVHYLR NQAMSRPCPA SVIPEVDIYK FDPWDLPDKA  120
EFGENEWYFF TPRDRKYPNG VRPNRAAVSG YWKATGTDKP IYSGSKYVGI KKALVFYQGR  180
PPKGTKSDWI MHEYRLSQST SRAHMHNGSM RLDDWVLCRI YKKKSVARPL DHDTGEDPTP  240
QPVKDANEPY KFPRPCSLTH LWELGIMGSI SQFLNDDSLP FSPQAALAGH PPGGDMFQAA  300
QVQPPLVADG FNFHQMYDGF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-726622815173NAC domain-containing protein 19
3swm_B4e-726622815173NAC domain-containing protein 19
3swm_C4e-726622815173NAC domain-containing protein 19
3swm_D4e-726622815173NAC domain-containing protein 19
3swp_A4e-726622815173NAC domain-containing protein 19
3swp_B4e-726622815173NAC domain-containing protein 19
3swp_C4e-726622815173NAC domain-containing protein 19
3swp_D4e-726622815173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678448114
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022878302.11e-119NAC transcription factor 29-like
SwissprotK4BNG71e-110NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A2G9FYW31e-115A0A2G9FYW3_9LAMI; Uncharacterized protein
STRINGXP_009598866.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-105NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]