PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678447683

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 369aa MW: 41688.3 Da PI: 8.5531

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678447683	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	96	131	3	38
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 e+k ++r+++NReAAr+sR RKka++++Le++ +L 678447683 96 EDKIQKRLAQNREAARKSRMRKKAYVQQLETERLKL 131 6899**************************865444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-8	94	138	No hit	No description
SMART	SM00338	2.5E-7	94	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	96	140	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-7	96	133	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-7	98	133	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.9E-25	184	257	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MGMDLAEIRN RKPVFLLPNT NWDLYDWMLQ GSCFWREAFD RKHRKERTAT RNTAGDNLKK 60 GFHVLSSFTF SSAAFDSNTS PGSSVSIIAG TETKLEDKIQ KRLAQNREAA RKSRMRKKAY 120 VQQLETERLK LAQLEVELER ARHHGLFNAT AAAHIGAYGT VNSGVAAFDM EYAHWVDVQE 180 AKIYELKNGV QSGICEAELR IMVESILSHY CDLFRMKRDA ARFDAFYVVS GMWRTSVERF 240 FLWIGGFRPS ELITVVKPHL GPLREDQVNS VDSLRHSCAQ AEEALSQGMD KLQQTLAQSL 300 AFLASGAGSY CSQTAAALDK LESLEGFIHQ NGRAPVFSGG TYHRATYSDQ VYRSGLSVFC 360 KFEFYGWLL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MGMDLAEIRN RKPVFLLPNT NWDLYDWMLQ GSCFWREAFD RKHRKERTAT RNTAGDNLKK  60
GFHVLSSFTF SSAAFDSNTS PGSSVSIIAG TETKLEDKIQ KRLAQNREAA RKSRMRKKAY  120
VQQLETERLK LAQLEVELER ARHHGLFNAT AAAHIGAYGT VNSGVAAFDM EYAHWVDVQE  180
AKIYELKNGV QSGICEAELR IMVESILSHY CDLFRMKRDA ARFDAFYVVS GMWRTSVERF  240
FLWIGGFRPS ELITVVKPHL GPLREDQVNS VDSLRHSCAQ AEEALSQGMD KLQQTLAQSL  300
AFLASGAGSY CSQTAAALDK LESLEGFIHQ NGRAPVFSGG TYHRATYSDQ VYRSGLSVFC  360
KFEFYGWLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678447683

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097899.1	1e-128	transcription factor TGA4 isoform X2
Swissprot	Q93ZE2	7e-90	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A4D8ZUK4	1e-118	A0A4D8ZUK4_SALSN; Transcription factor TGA
STRING	Migut.C00214.1.p	1e-118	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	7e-92	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]