PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678446906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22071.4 Da PI: 9.1964 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.1 | 1.7e-20 | 21 | 68 | 1 | 48 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCkvlrr+C ++Cvlapyfp +++ kfa +h++FGasn++kll+ 678446906 21 PCAACKVLRRRCLQNCVLAPYFPPDDSIKFASAHRVFGASNIIKLLQV 68 7********************************************986 PP | |||||||
2 | DUF260 | 57.2 | 5e-18 | 95 | 148 | 47 | 100 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lqqq+++l+a+la+ ++e 678446906 95 QELPERQRADAVSSMVYEANARLRDPVYGCAGAIYQLQQQINELQAQLAKSRAE 148 7899*********************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.337 | 20 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-19 | 21 | 68 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-16 | 92 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MESSVITATL TQLQQSPVTS PCAACKVLRR RCLQNCVLAP YFPPDDSIKF ASAHRVFGAS 60 NIIKLLQVRL PRSALIRCRA RVVIVVYYGS NFLPQELPER QRADAVSSMV YEANARLRDP 120 VYGCAGAIYQ LQQQINELQA QLAKSRAEMN ALRLQYATLA SSLFLQPPHS QPLFAGDYTS 180 GGHPHSLGTP FEYYSSFMG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 20 | 157 | 10 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 20 | 157 | 10 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678446906 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805041.1 | 2e-55 | LOB domain-containing protein 11-like | ||||
Swissprot | Q9SK08 | 9e-51 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2H3YXP4 | 4e-54 | A0A2H3YXP4_PHODC; LOB domain-containing protein 11-like | ||||
STRING | XP_008805041.1 | 6e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-44 | LOB domain-containing protein 11 |