PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HSF | ||||||||
Protein Properties | Length: 656aa MW: 74536.7 Da PI: 7.9233 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.3 | 7.8e-36 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F+ k+ye+l+d++ ++++sws++++sf+v+++ ef+++vLp+yFkhsnf+SF+RQLn+YgF+kv+ e+ weF+++ F +gk +ll++i+ 678445611 14 FIAKTYEMLDDKSANSVVSWSHSNKSFIVWNPPEFSRDVLPRYFKHSNFSSFIRQLNTYGFRKVDPEK---------WEFANEDFIRGKPQLLKNIH 101 9********************999*****************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k 678445611 102 RRKP 105 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.9E-34 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.4E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.1E-38 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-17 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-17 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-17 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF07498 | 1.0E-6 | 623 | 651 | IPR011112 | Rho termination factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006353 | Biological Process | DNA-templated transcription, termination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MDEAPCSSNS LAPFIAKTYE MLDDKSANSV VSWSHSNKSF IVWNPPEFSR DVLPRYFKHS 60 NFSSFIRQLN TYGFRKVDPE KWEFANEDFI RGKPQLLKNI HRRKPVHSHS LPNLASFPPL 120 NEYERNGYKD EVEKLRRDRE SLIMELRSKQ RAHEELTELM GSLMGRVQRV ENRHTKMLST 180 MARTIQRPVL DFISIPEVNH RKRRFPSHDF LSEEASTKDT ETTPQTLIPA IDTSPLAIFN 240 NELLEQLESS LMFWESVAAD LDVDEGLVQH DPSSMELFDS ANCASSPCIS YTQLNVNIPD 300 PTAGIDMNSE PKTSSVGEVG APPEDEGTAN TRGGVNDVFW EQFLTENPGS GDGGEAYWLN 360 TRNVNKLREQ LGSLTPTERT LSEVEGLTWR ERCLTTGYTK KRFRSSALWL SESARGIKWL 420 NFSSLHSHFC KPVHYRRCPD PLFLRGLLFL HQRLFNLAEI ARIPSIRSRA PPHSNRGRVT 480 AEVDLPEDDS RRKSSLSPNK EAILDLFKRI QSSISKGETP SSRKRNMKLN GNNNAPSAES 540 LIEALNTKRG NASSGKGYKS KDTFKNDEDG TQNSTPTRPP SNFSRRSPIP RSTKMEVSTP 600 NLAQEEEPVI EADENSAQTL KFEEMTLQQL KEEAKLRGIK GYSRLRKSDL LELFAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-20 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-20 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-20 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445611 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101446.1 | 1e-148 | heat stress transcription factor A-4a | ||||
Refseq | XP_011101447.1 | 1e-148 | heat stress transcription factor A-4a | ||||
TrEMBL | A0A2G9HV99 | 1e-150 | A0A2G9HV99_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00999.1.p | 1e-142 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3448 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 4e-89 | heat shock transcription factor A4A |