PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678445349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | G2-like | ||||||||
Protein Properties | Length: 227aa MW: 24416.2 Da PI: 6.7218 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.8 | 7.5e-31 | 49 | 102 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ R 678445349 49 KQRLRWTHDLHERFVDAVSQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQVQR 102 79*************************************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.272 | 46 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-29 | 47 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-15 | 48 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.8E-24 | 49 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-7 | 51 | 100 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.4E-10 | 97 | 124 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MHQPNAVPNP SLVNTSPGLL HPTVDCGTNA MDPAAGSNGA NSNRNSASKQ RLRWTHDLHE 60 RFVDAVSQLG GPDRATPKGV LRIMGVQGLT IYHVKSHLQV QRQLQLRIEA QGKYLKKIIE 120 EQQRLSGVLS EAPGLGADTG PLDPENMDPP TPVPTSESPP MDNPPKELAP GQSSHSVEES 180 FLQHEPLTSD SDTPTARPAK KQRSSNDSSF SKPCMAPTNS ILESSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-22 | 49 | 107 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678445349 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554068.1 | 2e-79 | uncharacterized protein LOC105175200 | ||||
Swissprot | Q9SJW0 | 4e-51 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2G9GE95 | 8e-83 | A0A2G9GE95_9LAMI; Uncharacterized protein | ||||
STRING | VIT_00s0475g00040.t01 | 2e-75 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2796 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-43 | G2-like family protein |