PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678444359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28196.2 Da PI: 9.7942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.7 | 1.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++ 678444359 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 94.6 | 1.6e-31 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + k+le ++ s++ elakL++++ Lqr++Rh++GedL++L+++eLq+Le+qL+ slk++Rs+K++ + e+i+ lqkk k+lqe+n +L+kk++e 678444359 79 ELKELELETPRSWRLELAKLNARMGVLQRSHRHYMGEDLDNLNMRELQSLEHQLDASLKHVRSRKDQAMNESISMLQKKAKALQEQNSMLEKKIKE 174 55667888899**********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.127 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.48E-42 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 5.1E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.775 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-26 | 89 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD 60 SCMERILERY ERSSRSEKEL KELELETPRS WRLELAKLNA RMGVLQRSHR HYMGEDLDNL 120 NMRELQSLEH QLDASLKHVR SRKDQAMNES ISMLQKKAKA LQEQNSMLEK KIKEREKEMA 180 QFIALEQHSH VTSFGQQLSN SLNDRNGNGE MYAVTGGSSR DMVVLVQDPG TSMIPRWMPH 240 HEDG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-20 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 87 | 1 | 87 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678444359 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086917.1 | 1e-103 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_011086918.1 | 1e-103 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q42429 | 9e-97 | AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A2G9H572 | 1e-104 | A0A2G9H572_9LAMI; MADS box transcription factor | ||||
STRING | XP_009792071.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 8e-78 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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