PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678444174
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 794aa    MW: 86579.9 Da    PI: 6.312
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678444174genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-192784457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+k+WFqNrR +ek+
  678444174 27 YVRYTAEQVETLERVYAECPKPSSHRRQQLIRECpilaNIEPKQIKIWFQNRRCREKQ 84
               5789****************************************************97 PP
2START113.62.9e-361483242173
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +ae ++++++ ka+ ++  Wv+++ +++g+ +  +f+ sk+++g a+r++ +   ++++ +e+l d++  W + ++++e+     sg  g+++l + +++
  678444174 148 IAEGTLADFLEKATGTAIDWVQMPGMKPGPGSDGIFAISKSCNGVAARVCSLISLEPTKILESLKDRM-SWYRECRSVEIFTMFPSGngGTIELLYIQTY 246
                67888999************************************************************.****************9999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                a+++lvp Rdf+++Ry+ +l  g++v++++S++ +   p+     ++vR+e+lpSg+li+p+++g+s +++v+h +l+
  678444174 247 APTTLVPaRDFWTLRYTTTLDNGSLVVCERSLSGTGAGPNggsALQFVRGEMLPSGCLIRPCEGGGSIIHIVDHYNLE 324
                *************************************999998999****************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.2E-152389IPR001356Homeobox domain
SuperFamilySSF466892.48E-162587IPR009057Homeodomain-like
CDDcd000861.29E-162686No hitNo description
PfamPF000462.4E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182884IPR009057Homeodomain-like
PROSITE profilePS5007115.3542985IPR001356Homeobox domain
CDDcd146865.01E-578115No hitNo description
PROSITE profilePS5084821.394138324IPR002913START domain
SuperFamilySSF559611.36E-26146324No hitNo description
SMARTSM002345.4E-24147356IPR002913START domain
PfamPF018523.1E-33149325IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-16185323IPR023393START-like domain
PfamPF086708.2E-42648793IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MAMVAPQHRD GSGNGGTIDK HLDGGKYVRY TAEQVETLER VYAECPKPSS HRRQQLIREC  60
PILANIEPKQ IKIWFQNRRC REKQRKEAIR LQGVNRKLTA MNKLLMEEND RLQKQATGPI  120
GDASSESAVT TPKHSLPGSR NPAGLLSIAE GTLADFLEKA TGTAIDWVQM PGMKPGPGSD  180
GIFAISKSCN GVAARVCSLI SLEPTKILES LKDRMSWYRE CRSVEIFTMF PSGNGGTIEL  240
LYIQTYAPTT LVPARDFWTL RYTTTLDNGS LVVCERSLSG TGAGPNGGSA LQFVRGEMLP  300
SGCLIRPCEG GGSIIHIVDH YNLEALKYIQ QLAQETSGEV AYGLGRQPGV LRTFSQMLSR  360
GFNDAVNGFN DDGWSIMKCD GNEDIIVAIG TLRNPIAGAS NPPVTSSVLC AKASMLLQNV  420
HPGMLVQFLR EHRSEWADFS VDAYISSALK NTYMDLGLRT TEFTGSHTTM QLVQTIEHEE  480
ILEIVRLEVH FLDHEDAFVS KGIHLLQMCS GIDDEAVGAC AELVYAPILE TFPDFSVLLP  540
CGFRVISLDR KPDSSPSCKA LDLAPSLEAG AATSSSCRGS SSPQGSRSIL IIAFQFPFES  600
SLLENVAAMA RQYVRNVMSP VQRVAMAISP ASPAVGSKLG SASPEALTLA HWLCRSYSYH  660
TGGELLGADP GSPIDDAVLK ALWRQRNAIL CCSLKAVPVF TFANQSGLDM LETALLALQG  720
IMIDKIFDDS GRRALFAEFS KIMRNGFAQL PGGVCTSTMG RNASYERAEI WKVFAEEESD  780
VHCLAFSFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678444174
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089294.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9HC040.0A0A2G9HC04_9LAMI; Uncharacterized protein
STRINGcassava4.1_001649m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]