PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678442289
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 310aa    MW: 34644.1 Da    PI: 9.0974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678442289genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05628123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C+k F++  +L  H+r+H
  678442289  6 FVCKLCNKKFPSGKSLGGHMRSH 28
               89********************9 PP
2zf-C2H211.50.00091242264123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C++ F++   L  H r+H
  678442289 242 HPCPFCSRIFKTGQALGGHKRSH 264
                78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-4329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-6333No hitNo description
PROSITE profilePS5015711.344633IPR007087Zinc finger, C2H2
PfamPF139124.4E-10628IPR007087Zinc finger, C2H2
SMARTSM003550.0031628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9956188IPR007087Zinc finger, C2H2
PfamPF139121.9E-76185IPR007087Zinc finger, C2H2
SMARTSM003551.16183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.58E-76283No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576677.58E-7237264No hitNo description
PROSITE profilePS501578.933242264IPR007087Zinc finger, C2H2
PfamPF139123.5E-8242264IPR007087Zinc finger, C2H2
SMARTSM003550.11242264IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEEFKFVCKL CNKKFPSGKS LGGHMRSHVD SRNMKSSKGS QFKKKVAVKV AESWGSDDAK  60
RICDHCGKEF QSLKALCGHL ACHSEKDLRG LKSRKVNKFA ETSSFSSVSE NNLDEQEQVA  120
MSLMLLSKDY YASKSNMESS DNNSVRSSSS FIKKTCSKME DIPFAAAMED SDSGYFLDHC  180
DDSESDVEVR NKSLKSVSKQ ETVKTENSMH VSKYSSMFSN SKPSGLRSYQ KLKADLKKKK  240
GHPCPFCSRI FKTGQALGGH KRSHFLIAYR ETQNTTPSIK PELPDLLDLN LPAPETGENG  300
LGNHDQLFSW
Cis-element ? help Back to Top
SourceLink
PlantRegMap678442289
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122442.15e-46zinc finger protein ZAT4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-17C2H2-like zinc finger protein