PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678441207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SRS | ||||||||
Protein Properties | Length: 259aa MW: 28834.3 Da PI: 8.5035 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 154.1 | 9.8e-48 | 17 | 191 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqq..qlaaasskaaasaaeaaskrkrel..................kskkq 83 +++CqdCGnqakkdC+h RCRtCC+srgf+C+thvkstW p+++rr +++ ++ ++ k+ ++++++ ++ + ++++ 678441207 17 SSSRCQDCGNQAKKDCEHLRCRTCCRSRGFHCQTHVKSTWTPMSRRRPKHAvdLQHGPNVKRCRDHHQELLGESLTVvvqirnflrscaflffevLHTQT 116 5689*******************************************98541134444444444443333333333322222223333344433222222 PP DUF702 84 salsstklssaeskkeletss........................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +P ev +avfr+vrvss ++ +++aYqt+v+igGh f GiLydqG+e 678441207 117 L-------------------ApvrclmpsfsafrrfknvgfegrdFPGEVCFPAVFRAVRVSSYNNTVDQFAYQTSVNIGGHNFTGILYDQGPE 191 2...................0222344445555566666777788***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-46 | 18 | 191 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.7E-25 | 21 | 62 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.4E-19 | 143 | 190 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMMRAEDLEA INSDSSSSSR CQDCGNQAKK DCEHLRCRTC CRSRGFHCQT HVKSTWTPMS 60 RRRPKHAVDL QHGPNVKRCR DHHQELLGES LTVVVQIRNF LRSCAFLFFE VLHTQTLAPV 120 RCLMPSFSAF RRFKNVGFEG RDFPGEVCFP AVFRAVRVSS YNNTVDQFAY QTSVNIGGHN 180 FTGILYDQGP EPDGTENFLG RESSSTTGGG GGAGGSILQH HFPASTTFAG TSTTSPHYPT 240 SQFPAFTFAG SQFFHYPKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678441207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | S8BY38 | 4e-65 | S8BY38_9LAMI; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 6e-40 | SHI-related sequence 5 |