PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678441204
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 312aa    MW: 34116.2 Da    PI: 6.9191
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678441204genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18240274135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C++ kTp+WR gp g+ktLCnaCG+++++ +l
  678441204 240 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 274
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-7114311IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-15234288IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.215234270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14237272IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.75E-14237297No hitNo description
CDDcd002022.14E-13239288No hitNo description
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16240274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MECTEARALK PGFLSQMGTK TSSQIFCNDD VWCFNAAAGA VSEDFPVEEL LNLDFSDKEF  60
QDCEDFEEHG EGLSKLGSNN SSSAFSGGAD DFDSLSTGNL TDEVEGLESL EWLSQFVDDS  120
MAELPSLWPT VKAFTHGSGT VNPPSQENRV AHFPIPVPRK RRNKRLRSNG LPWSLVSLPL  180
SSVYSTSAAS SSSHGSSSLP ASVFPPHLQD WLPSIEKAPS AKKPKRKPES ESGTVSGRRC  240
THCQVQKTPQ WRTGPLGPKT LCNACGVRFK SGRLLPEYRP ACSPTFSQAV HSNSHRKVLE  300
MRRMKEMTAA GF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678441204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.21e-116GATA transcription factor 5-like
RefseqXP_020551667.11e-116GATA transcription factor 5-like
TrEMBLA0A2G9GRK71e-112A0A2G9GRK7_9LAMI; GATA transcription factor
STRINGMigut.N01274.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-38GATA transcription factor 9